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This PR is a part of the effort to make the VFS used in the compiler
more explicit and consistent.
Instead of creating the VFS deep within the compiler (in
`CompilerInstance::createFileManager()`), clients are now required to
explicitly call `CompilerInstance::createVirtualFileSystem()` and
provide the base VFS from the outside.
This PR also helps in breaking up the dependency cycle where creating a
properly configured `DiagnosticsEngine` requires a properly configured
VFS, but creating properly configuring a VFS requires the
`DiagnosticsEngine`.
Both `CompilerInstance::create{FileManager,Diagnostics}()` now just use
the VFS already in `CompilerInstance` instead of taking one as a
parameter, making the VFS consistent across the instance sub-object.